Hayriye Gulbudak - Weitz Group @ Georgia Tech

Hayriye Gulbudak - Weitz Group @ Georgia Tech

Hayriye Gulbudak
June 11, 2015
Georgia Institute of Technology, School of Biology,
310 Ferst Drive, Atlanta, GA 30332
+1(352)871-4294
hgulbudak3@gatech.edu,
http://ecotheory.biology.gatech.edu/people/hayriye-gulbudak-0
Education
Ph.D in Mathematics, University of Florida,
August 2014.
Advisor: Maia Martcheva
Dissertation: Modeling Avian Influenza and Control Strategies in Poultry
M.S. in Mathematics, University of Florida,
December 2011.
English Programs for Internationals (EPI), University of SC,
May 2009.
B.S. in Mathematics, Suleyman Demirel University, Turkey,
Advisor: Serpil Pehlivan
Dissertation: Linear Optimization
July 2007.
Appointments
Postdoctoral Fellow
School of Biology, Georgia Institute of Technology, 2014-2017 .
Mentor: Joshua Weitz.
Affiliated Researcher
School of Mathematics, Georgia Institute of Technology, 2015-2017.
Research Assistant for QSE3 IGERT program
University of Florida, Spring 2014.
University of Florida, Summer 2013.
Research Assistant
University of Florida, Fall 2013.
University of Florida, Spring 2013.
University of Florida, Summer 2012.
Graduate Assistant
Suleyman Demirel University, Turkey, Fall 2007.
Instructor:
Department of Mathematics, University of Florida
MAC 1140 Pre-calculus Algebra, Summer 2014.
Teaching Assistant:
Department of Mathematics, University of Florida
MAC 2312 Analytic Geometry and Calculus 2, Fall 2012.
MAC 2311 Analytic Geometry and Calculus 1, Spring 2012.
MAC 2311 Analytic Geometry and Calculus 1, Fall 2011.
MAC 1147 Pre-calculus with Trigonometry, Spring 2011.
Hayriye Gulbudak
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Publications/ Manuscripts Under Review
• H. Gulbudak, M. Martcheva, Forward Hysteresis and Backward Bifurcation Caused by
Culling in an Avian Influenza Model, Math. Biosci. 246: 202-212, 2013.
• H. Gulbudak, M. Martcheva, A Structured Avian Influenza Model with Imperfect Vaccination and Vaccine induced Asymptomatic Infection, Bull. Math. Bio. 76 (10), 2014, p.
2389-2425.
• H. Gulbudak, J. Ponce, M. Martcheva, Co-Existence Caused by Culling In a Two-Strain
Avian Influenza Model (Preprint).
• H. Gulbudak, J. Weitz, A Biophysical Model of Archaea/Bacteria Dormancy Induced by
Viral Contact (Under Revision).
• C. Browne, H. Gulbudak, G. Webb, Modeling Contact Tracing in Outbreaks with Application to Ebola (Under Review).
• N. Tuncer, H. Gulbudak, V. Cannataro, M. Martcheva, Structural and practical identifiability issues of immuno-epidemiological vector-host models with application to Rift Valley
Fever (Submission Pending Completion of Complementary Manuscript).
Invited Talks
Modeling Contact Tracing in Ebola Outbreaks
Center for Disease Control (CDC), Atlanta, Georgia,
March, 2015
An Avian Influenza Model with Imperfect Vaccination and Age-Since-Vaccination Structure
2014 SIAM ANNUAL MEETING
The Palmer House, Chicago, Illinois,
July, 2014
Coupling Within-Host and Between-Host Dynamics in Arbovirus Diseases
The QSE3 IGERT Annual Symposium
University of Florida, Gainesville, FL,
Modeling Avian Influenza and Control Strategies in Poultry
The 38th Annual SIAM Southeastern Atlantic Section Conference
Florida Institute of Technology, Melbourne, FL,
A Structured Avian Influenza Model with Imperfect Vaccination
2014 Joint Mathematics Meetings
Baltimore Convention Center, Baltimore, MD,
April, 2014
March, 2014
January, 2014
A Structured Avian Influenza Model with Imperfect Vaccination
The Fourth International Conference on Mathematical Modeling and Analysis of Populations
in Biological Systems: Mathematical Modeling of Complex Dynamics from Cells to Ecosystems
Texas Tech University, Lubbock, TX,
October, 2013
An Avian Influenza Model with Imperfect Vaccination and Age-Since-Vaccination Structure
33rd Southeastern-Atlantic Regional Conference on Differential Equations
University of Tennessee, Knoxville, TN,
September, 2013
A Structured Avian Influenza Model with Imperfect Vaccination
The Society for Mathematical Biology Annual Meeting and Conference
Tempe Mission Palms Hotel and Conference Center, Tempe, AZ,
June, 2013
Modeling Rift Valley Fever in a Nested Immuno-epidemiological Vector-Host Model
QSE 3 IGERT Annual Symposium
University of Florida, Gainesville, FL,
April, 2013
Modeling Culling in an Avian Influenza Model
SIAM SEAS 2013 Annual Meeting
Oak Ridge National Laboratory & University of Tennessee, Knoxville, TN,
March, 2013
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Modeling Culling in an Avian Influenza Model
AMS Fall Sectional Meeting
Arizona State University, Tucson, AZ,
October, 2012
Bistable Dynamics Caused by Culling in an Avian Influenza Model
MathBio Seminar
University of Ottawa, Ottawa, Canada,
October, 2012
Seminar, Colloquium Talks
Modeling Avian Influenza and Control Strategies in Poultry
Mathematical Biology and Ecology Seminar
Georgia Institute of Technology, Atlanta, GA,
October, 2014
Increased Disease Prevalence of Avian Influenza in Poultry Caused by Imperfect Vaccination
UF SIAM Seminar
University of Florida, Gainesville, FL,
November, 2013
Coupling Within-Host and Between-Host Dynamics in Arbovirus Diseases
Biomath Seminar
University of Florida, Gainesville, FL,
October, 2013
A Structured Avian Influenza Model with Imperfect Vaccination and Vaccine Induced Asymptomatic Infection
MAP6487 Biomath Seminar 1,
Department of Mathematics, University of Florida,
October, 2013
Modeling Arbovirus Diseases in a Nested Immuno-Epidemiological Vector-Host Model
QSE 3 IGERT Colloquium
University of Florida, Gainesville, FL,
October, 2013
A Structured Avian Influenza Model with Imperfect Vaccination
Biomathematics Seminar
University of Florida, Gainesville, FL,
April, 2013
A Structured Avian Influenza Vaccination Model
Joint SIAM/Biomathematics Seminar
University of Florida, Gainesville, FL,
February, 2013
Cross Species Transmission of Avian Flu Virus
MAT 6032 Seminar in Biomath,
Department of Mathematics, University of Florida,
December, 2012
Culling in an Avian Influenza Model
SIAM Seminar
University of Florida, Gainesville, FL,
November, 2012
Complex Dynamics Caused by Culling in an Avian Influenza Model
Biomathematics Seminar
University of Florida, Gainesville, FL,
September, 2012
A Branching Process of HIV Immune Escape
MAT 6032 Seminar in Biomath,
Department of Mathematics, University of Florida,
December, 2011
Workshop Poster Presentations
Modeling Contact Tracing in Ebola Outbreaks
Ebola Modeling Workshop
Georgia Tech, Atlanta, GA,
January, 2015
Co-Existence Caused by Culling In a Two-Strain Avian Influenza Model (with Joan Ponce)
UF Graduate Student Research Day
University of Florida , Gainesville, FL,
October, 2013
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Asymptomatic Spread Caused by Imperfect Vaccine in a Structured Avian Influenza Model
UF Graduate Student Research Day
University of Florida , Gainesville, FL,
October, 2013
Modeling Arbovirus Diseases in a Nested Immuno-epidemiological Vector-Host Model
Workshop 2: Rapid Evolution and Sustainability
Mathematical Biosciences Institution , Columbus, OH,
October, 2013
Imperfect Vaccination in a Structured Avian Influenza Model
2013 Workshop for Young Researchers in Mathematical Biology
Mathematical Biosciences Institution , Columbus, OH,
August, 2013
Awards and Honors
QSE 3 IGERT Research Assistantship (awarded research project with an experimental biologist) (Spring 2014).
Research Assistantship (NSF grant DMS-1220342 to M. Martcheva) (Fall 2013).
QSE 3 IGERT Summer Research Assistantship (awarded research project with a biologist)
(Summer 2013).
Research Assistantship (NSF grant DMS-1220342 to M. Martcheva) (Spring 2013).
Research Assistantship (NSF grant DMS-0817789 to M. Martcheva) (Summer 2012).
Turkish National Education Ministry Fellowship (2009-2011).
Turkish National Education Ministry Fellowship (2008-2009).
Graduate Assistantship, Suleyman Demirel University, 2007-2008, Turkey (On average one
Graduate Assistantship given every two years in the department).
Travel Awards
July 2014, CLAS travel grant, UF, $300,
July 2014, CAM travel grant, UF, $600,
January 2014, NSF grant DMS-1220342 to M. Martcheva, UF, $700.00,
January 2014, GSC travel grant, UF, $300,
October 2013, QSE 3 IGERT travel grant, $200.00,
October 2013, MBI travel grant (including lodging and airfare and taxis), $573.24 (plus lodging
expenses for 4 nights),
October 2013, ICMA IV travel grant, $500.00
September 2013, NSF grant DMS-1220342 to M. Martcheva, UF, $967.18
August 2013, NSF grant DMS-1220342 to M. Martcheva, UF, $ 139.01
August 2013, MBI travel grant (including lodging and airfare and taxis), $600 (plus lodging
expenses for 4 nights),
June 2013, NSF grant DMS-1220342 to M. Martcheva, UF, $500.00
June 2013, SMB Landahl travel grant, $500,
June 2013, CAM travel grant, UF, $500.
April 2013 , AMS travel grant, $ 250.
March 2013, CLAS travel grant, UF, $ 300.
March 2013, NSF grant DMS-1220342 to M. Martcheva, UF, $655.09
October 2012, NSF grant DMS-1220342 to M. Martcheva, UF, $591
October 2012, CLAS, University of Florida, $300
July 2012, NSF grant DMS-0817789 to M.Martcheva, UF, $1004.20.
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Graduate Students Mentored
• Bradford Taylor-PhD Student (Fall 2014- Present)(Georgia Institute of Technology)
– Project: Virophage Invasion and Evolution
• Ilan Rubin-Visitor Student (Spring 2015)(Georgia Institute of Technology)
– Project: An Agent-Based Model for Contact Tracing in Ebola Outbreaks
Undergraduate Students Mentored
• Joan Ponce (Fall 2012- Spring 2012)(University of Florida- 4th year undergraduate student in
Mathematics)
– Weekly meetings.
– Guided for thesis preparation.
– Prepared and submitted a manuscript to a journal.
– Prepared and presented a poster.
Synergistic Activities
• Reviewer for journals: J. Biol. Sci., Math. Biosci., Plos ONE and an author of the blog
“Modeling Avian Influenza” http://modelingavianinfluenza.wordpress.com/ .
• Vice president of UF SIAM Chapter (2012-2013).
• An organizer of 3rd UF SIAM Conference (Mathematical Biology Section) and Poster Judge
in 2012 Graduate Student Research Day at UF.
Mini-symposium Organized
• The 38th Annual SIAM Southeastern Atlantic Section Conference, Florida Institute of Technology, Melbourne, FL, on March 28-30, 2014.
Mini-symposium title: Modeling Infectious Diseases and Control Strategies
Organizers: Hayriye Gulbudak (UF), Cameron Browne (Vanderbilt Unv.), Abhishek Pandey
(Clemson Unv.)
Speakers: Hayriye Gulbudak (UF), Cameron Browne (Vanderbilt Unv.), Abhishek Pandey
(Clemson Unv.), Gordon Akubidillah (Oregon State)
• 2015 Society for Mathematical Biology Annual Meeting, Georgia State University, Atlanta,
GA, on June 30-July 3, 2015.
Mini-symposium title: Modeling the Ecology and Evolution of Virus-Microbe Systems
Organizer: Hayriye Gulbudak (Georgia Tech), Co-organizer: Joshua Weitz (Georgia Tech)
Speakers: Hayriye Gulbudak (Georgia Tech), Hal Smith (ASU), Jeremy Barr (San Diego State
Unv.), and Hong-Yan Shih (Unv. of Illinois at Urbana-Champaign).
Memberships
Society for Mathematical Biology (SMB), July 2012-now.
American Mathematical Society (AMS), August 2009 -now.
Society for Industrial and Applied Mathematics (SIAM),September 2012-now.
Association for Women in Mathematics(AWM), September 2012-now.
Mathematical Association of America(MAA), August 2009-now.
UF Graduate Mathematics Association(GMA),August 2009-August 2014.
Skills
MATLAB, Latex, R, Microsoft Office Programs, Scientific Work Place, C++, Webassign, Sakai
Hayriye Gulbudak
References
Maia Martcheva
Colonel Allan R. and Margaret G. Crow Professor
University of Florida, Department of Mathematics
maia@ufl.edu
http://www.math.ufl.edu/~maia/
Joshua S. Weitz
Professor
Georgia Institute of Technology, School of Biology and School of Physics
jsweitz@gatech.edu
http://ecotheory.biology.gatech.edu/people/joshua-weitz
Scott A. McKinley
Assistant Professor
University of Florida, Mathematics Department
scott.mckinley@ufl.edu
http://www.math.ufl.edu/ scott.mckinley/ufhome/Home.html
Kwai-Lee Chui
Lecturer
University of Florida, Mathematics Department
chui@ufl.edu
http://www.math.ufl.edu/ chui/
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