for Defining Functional Foods Cindy D. Davis davisci@mail nih gov
Transcription
for Defining Functional Foods Cindy D. Davis davisci@mail nih gov
Challenges and Opportunities Using “omics” for Defining Functional Foods Cindy D. Davis davisci@mail.nih.gov davisci@mail nih gov Nutritional Science Research Group Division of Cancer Prevention National Cancer Institute Bethesda, MD 20892 Ascorbic Acid Folate polyphenolics Stanols & sterols Indole-3-carbinol Flavonoids Carotenoids anthocyanidins Diet has been implicated in the incidence of 6 out of 10 of the leading causes of death of Americans Surgeon General’s Report Difficult Problem: While unprecedented opportunities exist for the expanded use of foods & components to achieve genetic potential, increase productivity and reduce the risk of disease, which of the 25,000 food components is most important and under what circumstances ? 1 Tomatoes Spinach Broccoli Garlic Nuts Salmon Oats Blueberries Green tea Red wine Time Magazine: January 21, 2002 Nutritional Preemption (A Strategy for Health Promotion) Concept that bioactive food components can be introduced at points of initiation & progression for pathway leading to an unhealthy or lethal phenotype R National Academy of Sciences Defines Functional Foods: “encompass potentially healthful products,” including “any modified food or food ingredient that may provide a health benefit beyond the traditional nutrients it contains. Recent Report Institute of Food Technologists IFT Experts Report March 24, 2005 2 Numerous Dietary Components Can Have Health Benefits Essential Nutrients- Ca, Zn, Se, Folate, C, E Non-Essential Phytochemicals- Carotenoids, Flavonoids, Indoles, Isothiocyanates, Allyl Sulfur Zoochemicals - Conjugated linoleic acid acid, n-3 n3 fatty acids Fungochemicals - Several compounds in mushrooms Bacteriochemical - Those formed from food fermentations and those resulting from intestinal flora Phytochemicals & Cancer Prevention Surh, Nature Reviews 3: 768-780, 2003 Phytochemicals May Influence Genetic Events Associated with Several Cancer Processes 3 The Literature Provides Mixed Conclusions. Epidemiologic Studies of Dietary Soy Components and Breast Cancer Risk Asian Lee ‘92 (total soy protein) Western p < 0.001 Premenopausal NS Postmenopausal Hirose ‘95 (beancurd, miso) Yuan ‘95 (tofu, soymilk) NS Premenopausal NS Postmenopausal NS p = 0.44– 0.44–0.79 Shanghai, Tianjin Wu ‘96 (tofu) p < 0.01 0 01 Premenopausal P l p < 0.05 Postmenopausal Dai ‘01 (soy) NS All Breast Cancer S Just ER+/PR+ Ingram ‘97 (urinary isoflavones) NS Diadzein p = 0.009 Equol den Tonkelaar ‘01 (urinary phytoestrogens) NS Postmenopausal Keinan--Boker ‘02 (food content) Keinan NS Isoflavones S Lignans .1 .3 .6 .6 1.3 .6 .8 2.6 1.0 .7 1.0 1.3 .61 .6 .46 .66 .25 .44 .17 .1 .95 .78 .47 1.33 .27 .69 .46 .83 1.3 .79 .34 0 .58 .5 1.08 1.59 .98 1 1.5 Estimated Relative Risk 2 Image courtesy of Nature, issue: Feb. 15, 2001 The Genetic Revolution is Providing New Insights into a Number of Health Issues Including the Role of Diet in Cancer Prevention What is Personalized Medicine? Using information about a person's genetic makeup to tailor strategies for the detection, treatment, or prevention of disease. 4 Promises of Personalized Medicine Improve disease classification precision of therapies targeting molecular mechanism(s) of disease Identify those at risk for disease Target interventions to high-risk groups Motivate individuals to engage in preventive health behaviors Facilitate informed decision-making for behavior and lifestyle modifications Burke W et al. Genetics in Medicine 8: 451-8, 2006 Personalized Medicine and Personalized Nutrition Recent advances: Herceptin is a Novel Pioneering Drug for Personalized Medicine Approach Based on Pharmacogenomics to block Her2-neu expression. Evidence Has Existed for Some Time: EGCG from Green Tea, Oleic Acid from Olive Oil, n-3 fatty acids from Fish Oil and Apigenin from parsley, thyme, and peppermint may also significantly influence HER2neu expression! Genetic Variation Most genes have small sequence differences (polymorphisms) between individuals Occur every 1350 bp on average Some of these polymorphisms may affect: How well the protein works How the protein interacts with another protein or substrate The different gene forms containing polymorphisms are called alleles 5 Can your genes tell you how to focus your diet for cancer prevention? ~ 30,000 genes in human genome and roughly five to eight million SNPs Is It Logical to Assume All Individuals will Respond Identically?? 6 Using the “Omics” of Nutrition to Identify Responders from Non-Responders N u t r i g e n o m i c s Bioactive Food Components Nutrigenetics DNA Nutritional Epigenetics RNA Nutritional Transcriptomics Phenotype Protein Proteomics Metabolomics Metabolite Nutrigenomics A discipline that investigates the effects of dietary components on the structure, function and regulation function, of coding and noncoding DNA segments of all genes present in the genome of a given species. What is Nutrigenomics? Nutrigenomics= the scientific study of the way specific genes respond to given nutrients Personalized Nutrition= application by individuals of their knowledge of nutrigenomics to their everyday decisions about nutrition Bioactive Food Components N U T R I G E N O M I C S Nutrigenetics g DNA RNA Nutritional Epigenetics Nutritional Transcriptomics RNA 7 What is the evidence that nutrigenetics has an impact on the relationship between diet and cancer? Genetic Variability Impacts Cancer Risk and May Determine Response to Selenium Effect of Glutathione Peroxidase Polymorphism on Lung Cancer Risk hGPX1 Codon 198 Pro/Pro Pro/Leu Leu/Leu P Cases (n=315) Controls (n=313) Odds Ratio 91 (29%) 157 (50%) 46 (21%) Px2<0.0001 132 (42%) 1 00 1.00 135 (43%) 1.8 46 (15%) 2.3 Ptrend<0.001 Ratnasinghe et al. Cancer Res. 60: 6381-6383, 2000 The leucine-containing GPx allele is also more frequently associated with breast, colon, and head and neck cancer. Glutathione Peroxidase proteins differing by a single amino acid at codon 198 respond differently to increasing selenium relative induction of G P X aactivity 6 5 4 198pro 198leu 3 2 1 0 0 30 60 90 120 150 Selenite(nM) Hu and Diamond, Cancer Res. 15: 3347-51, 2003 8 What About Other Antioxidant Enzymes? Manganese Superoxide Dismutase (MnSOD) 1. A major enzyme responsible for the detoxification of reactive oxygen species in the mitochondria. 2. T → C substitution, resulting in a Val → Ala change at the -9 position (Val-9Ala), alters the secondary structure of the protein and has been noted to affect transport of MnSOD into the mitochondria. Manganese Superoxide Dismutase Polymorphism (Val-9Ala ) & Breast Cancer Risk Odds Ratio 2 1.8 1.3 1 0 Val/Val Ala/Ala Val/Val Ala/Ala Postmenopausal Cai et al. Breast Cancer Res. 2004; 6:647-55 Prostate Cancer Risk Modification by MnSOD Genotype and Prediagnostic Levels of Plasma Antioxidants RR Prostatte Cancer 2 * MnSOD Genotype VV and VA AA 1.6 1.2 0.8 * 0.4 0 1 2 3 4 Quartile Baseline Selenium Li H, et al. Cancer Res. 2005 65:2498-504. 9 Polymorphism in Folate Metabolism Can Influence Health 5,10-methylenetetrahydrofolate reductase (MTHFR): 677 C to T substitution, occurs in 5-20% of the population worldwide MTHFR Genotype, Dietary Folate and Colon Cancer Risk ODDS Ratio 1 677CC 677TT 0.8 0.6 0.4 0.2 0 <273 > 388 Dietary Folate (mg/day) Curtin et al., Cancer Epidemiology, Biomarkers, Prevention 13: 285-292, 2004 Polymorphisms in Many Folate-Metabolizing Enzymes May be Linked to Cancer Risk Ulrich et al. Cancer Epidemiol Biomarkers Prev 14: 2509-2516, 2005 10 Polymorphisms in the Vitamin D Receptor Gene Locations of five known polymorphisms within or near the human VDR gene These polymorphisms may alter 1,25 Vitamin D function and thereby affect cancer risk Oakley-Girvan et al., Cancer Epidemiol Biomarkers Prev 13: 1325-30, 2004 Vitamin D Receptor Gene Polymorphisms and Breast Cancer Risk 2 * 2 * P<0.01 12 1.2 0.8 0.4 0 bb Bb BsmI polymorphism BB * 1.6 Odds Rattio Odds Ratio o 1.6 12 1.2 0.8 0.4 0 LL LS SS Poly (A) Polymorphism Guy et al. Clinical Cancer Research, 10: 5472-5481, 2004 VDR FokI Polymorphism Affects Calcium Metabolism Abrams et al. J. Bone Mineral Res. 20: 945-953, 2005 11 Dietary Calcium, VDR FokI Genotype and Colon Cancer Risk OR for Colon Cancer 3 * 2.5 * 2 Dietary Calcium < 388 mg/day >388 mg/day 15 1.5 P ffor ttrend=0.004 d 0 004 1 0.5 0 FF Ff ff VDR Genotype Wong et al. Carcinogenesis, 24: 1091-1095, 2003 Need to Consider Haplotypes in the VDR Gene Uitterlinden et al. Gene 338: 143-156, 2004 Variations in The Human Genome International HapMap Project- constructed a map of patterns of SNPs occurring across populations in Africa, Asia and the U.S. was completed in 2005 http://www.hapmap.org/ Scientists have identified about 3 million locations where single-base DNA differences (SNPs) occur in humans. This information is revolutionizing the process of finding chromosomal locations for disease-associated sequences and tracing human history. 12 Diet Can Modify Genetic Susceptibility to Cancer % of Animals with T Tumors 100 Prostate Tumors in Lady mice. 80 Antioxidants= vitamin E, selenium and lycopene 60 40 20 * * 0 Control High Fat Control + Anti High Fat + Anti Venkateswaran et al., Cancer Research 64: 5891-5896, 2004 Gene-Nutrient Interactions and Colon Cancer p21+/+ AIN-76A Diet 100 p21+/- AIN-76A Diet Percent survival 90 p21+/+ Western Diet 80 p21-/- AIN-76A Diet p21+/- Western Diet 70 60 50 40 p21-/- Western Diet 30 20 10 0 0 4 8 12 Yang et al, Cancer Res. 61, 565, 2001 16 Weeks 20 24 28 32 36 One Size Does Not Fit All! Genetic Background May Determine Who Will Respond to Bioactive Food Components 13 Nutrigenetics Today! • Commercial Nutrition-Gene Test – Genelex Sciona 19 genes including MTHFR $395 – Gene Care CVD nutritional genetic test (South Africa) MTHFR (Hcyst), apoA1 (HDL) +9 others $400 • About 30, 000 Genes, 5-8 Million SNPs http://www.gao.gov/new.items/d06977t.pdf GAO Investigation: Nutrigenetic Testing Created fictitious consumers by submitting for analysis 12 DNA samples from a female and 2 samples from an unrelated male Submitted DNA from cheek swab to analyze between 4-19 genes and submitted questions about sex, age, weight, and lifestyle Fees ranged from $89 to $395 14 Genetic Testing Promises vs Reality! All predicted fictitious consumers were at risk for developing a range of conditions Many predictions were medically unproven and/or ambiguous results with no meaningful information Some recommend expensive supplements similar to commonly available vitamins and antioxidants ($1200/yr vs $35/yr) and make unproven claims, e.g. “DNA repair” and Cat’s Claw Some provided common sense health recommendations instead of those based on unique genetic profile Because genotype contributes to phenotype…. If it were only this easy… Future Directions for Nutrigenetics Human genetic variation and HapMap Affordable whole genome association studies Better methods to measure dietary intake More powerful study designs to assess G x E Identification of clear nutritional benefits for individuals More clearly identify the benefits • Health claims • Identification of non-traditional nutrients Improvements in the food supply Possible use of supplements that have clear benefits 15 Genes Are Only Part Of The Equation Epigenetics Definition • genetics: the study of heritable changes in gene function that occur with a change in q the DNA sequence • Epigenetics: the study of heritable changes in gene function that occur without a change in DNA sequence. What is Epigenetics? • Epigenetic abnormalities are involved in cancer, genetic disorders, pediatric syndromes, and contributing factors in autoimmune diseases and aging • Influence gene expression • Two critical mechanisms: – DNA methylation – Histone posttranslational modification 16 DNA Methylation • The covalent addition of methyl group to 5’ position of cytosine – Largely confined to CpG dinucleotides – CpG islands - regions of more than 500 bp with CG content > 55% – Islands found in promoter regions of genes • Catalyzed by DNA methyltransferases Epigenetic Regulation of Cancer Epigenetics Regulates: Regulating Factors Cell Cycle Control DNA Damage Apoptosis Invasion X-Chromosome Inactivation Imprinting Aging g g Dietary Hormonal Genetic DNA Methyltransferases Histone Methyltransferases Histone Acetylases/Deacetylases Global Hypomethylation Site Specific Hypermethylation Histone Modifications Verma M, Srivastava S. Lancet Oncol. (2002) 3:755-63. Dietary Factors Known to Influence DNA Methylation Alcohol Choline Equol Folate Methionine Tea Polyphenols Vitamin B6 Zinc Arsenic Coumestrol Fiber Genistein Selenium Vitamin A Vitamin B12 17 Bioactive Food Components in the DNA Methylation Process Nutrients Polymorphisms SAH SAM DNA Methyltransferase CpG Me-CpG DNA Demethylation Nutrients? Tumor LTR Hypomethylated LTR Hypermethylated Maternal Supplements zinc i methionine betaine choline, folate B12 Yellow Mouse High risk cancer, diabetes, obesity & reduced lifespan Agouti Mouse Lower risk of cancer, diabetes, obesity and prolonged life Cooney et al. J Nutr 132:2393S (2002) Genistein Can Also Influence Agouti Phenotype Viable yellow Agouti (Avy) Locus Yellow Slightly Mottled Heavily PseudoMottled Mottled agouti Control Diet Supplemented Diet 100 Cells Methylated (% %) 100 40 Avy Offspring (% of Total) Control Diet Genistein Diet p = 0.007 30 90 90 80 80 70 70 60 60 50 50 40 40 30 30 20 20 Pseudo-agouti 80% Heavily Mottled 50% Mottled 26% 20 Slightly Mottled 13% 10 10 10 0 0 Yellow Slightly Mottled Mottled Heavily Mottled Pseudoagouti Yellow 7% 0 0 1 2 3 4 5 CpG Site in Avy PSIA 6 7 0 1 2 3 4 5 6 7 CpG Site in Avy PSIA Dolinoy et al. Envir. Health Perspect. 114: 567-572, 2006 18 •DNA is packaged into chromatin •Primary constituent of chromatin is the nucleosome (octamer of 4 histone proteins) •Once thought to be merely a scaffold for DNA •Now recognized as a major contributor to regulating DNA processing •Closed chromatin is a barrier to transcription, replication and repair of DNA Peterson and Laniel (2004) Curr Biol. 14:R546-51. Chromatin Structure Influences Gene Expression Gene “switched on”: open chromatin, unmethylated cytosines, acetylated histones Gene “switched off”: closed chromatin, methylated cytosines, deacetylated histones Histones Can Be Regulated by Isothiocyanates, Allyl Sulfur, Genistein, and Butyrate HDAC Co-repressor complex Acetylated histones H3 and H4 associated with P21 and Bax promoters HDAC Inhibition Molecular Target?? Transcription of P21 and Bax mRNA HDAC Co-repressor complex acetyl groups added p21 and Bax protein levels increased Cell cycle arrest Caspase activation APOPTOSIS 19 HDAC Inhibition by SFN-rich Broccoli Sprouts in Human Volunteers. Dashwood RH, Ho E. Semin Cancer Biol. 2007 May 5; [Epub ahead of print] Resveratrol improves health and survival of mice on a high-calorie diet Histone Modification by Dietary Factors Inhibited by copper, curcumin INACTIVE CHROMATIN ACTIVE CHROMATIN Histones acetylated HATs HDACs Type I & II: inhibited by butyrate, diallyl disulfide, sulforaphane Histones unmodified Type III: require NAD+ Calorie restriction, resveratrol HMTs Histones methylated (H4-Lys20) Methyl deficiency DNMTs DNA methylated 20 Genetic and Epigenetic Events Can Effect DNA and Therefore Gene Expression Transcriptomics The study of the transcriptome, which is the complete set of RNA transcripts produced by the genome, and which link the genome, proteome, and the cellular phenotype. Key Variables: Length and Timing of Exposure, Effective Concentration Petricoin, EF and Liotta LA, J. Nutr. 133:2476S-2484S, 2003 21 Transcriptomic Studies Are Providing Clues About Molecular Targets for Specific Food Components Selenium in LNCaP Cells: Androgen Signaling Proliferation/Cell cycle Detoxification Immune/stress Apoptosis Transcription Signal Transduction Cell Shape Zhao et al., Molec. Biol. Cell 15: 506-519, 2004 Gene Expression Changes in Breast Cancer Cell Lines Treated with Lycopene A=apoptosis; B= cell cycle; C= receptors; D= oncogenes; E= DNA repair Chalabi N et al. Pharmacogenomics 7:663-672, 2006 Transcriptomic Studies Are Providing Clues About Molecular Targets for Phytochemicals Resveratrol in LNCaP cells Narayanan BA Current Cancer Drug Targets 6: 711-727, 2006 22 Isothiocyanates Organosulfur compounds Selenium Isothiocyanates HS S keap-1 SH keap-1 S nrf2 Cytoplasm nrf2 nrf2 small maf Nucleus ARE “antioxidant responsive element” Increased GST, QR Transgenic and Knockout Models Key to Identifying Sites of Action of Food Components Microarray Analysis of Nrf-2 Knockout Mice fed Sulforaphane The majority of up-regulated genes at the inducible and/or basal level are associated with various metabolic reactions involved in detoxification of electrophiles and free radicals. Thimmulappa et al. Cancer Res. 62: 5196-5203, 2002 Transcriptomics: Differentially expressed genes in human leukocytes after consumption of a high protein or high carbohydrate breakfast HC: Glycogen metabolism genes HP : Genes involved in protein biosynthesis Both: Immune response and signal transduction van Erk MJ, et al. Am J Clin Nutr. (2006) 84:1233-41. 23 Proteomics The systematic evaluation of changes in the protein constituency of a cell to characterize disease processes through protein pathways that interconnect the extracellular microenvironment with the control of gene transcription. Key Variables: Length and Timing of Exposure, Effective Concentration Petricoin, EF and Liotta LA, J. Nutr. 133:2476S-2484S, 2003 Surface-Enhanced Laser Desorption/Ionization TimeOf-Flight Mass Spectrometry (SELDI-TOF) Urol Oncol. 22:322-8, 2004 Proteomic Analysis of QuercetinTreated HT-29 Cells 2-D PAGE followed by mass spectrometry More than 600 protein spots resolved: 20 spots differed at least 2-fold 2f between treated and control cells These proteins included annexins, detoxification enzymes, cytoskeletal, metabolism and gene regulation Wenzel et al. Proteomics, 4: 2160-2174, 2004 24 Proteomic Analysis of Breast Cancer and Normal Breast Tissue Scattergram 2-Dimensional difference gel electrophoresis Red= higher expression in breast cancer Green= higher expression in normal Yellow= similar expression LC/LN= low cancer, low normal LC/HN=low cancer, high normal HC/LN= high cancer, low normal HC/HN= high cancer, high normal Somiari et al, Proteomics 3: 1863-1873, 2003 Pioneering New Technologies: Proteomics Identify abnormal protein structures and show how shape affects biology and response to diet Determine if and how bioactive food components influence 3-D proteins Use to assess the influence of intervention strategies on protein expression What Is Metabolomics? “...the complete set of metabolites/low-molecularweight intermediates, which are context dependent, varying according to the physiology, developmental or pathological state of the cell, tissue, organ or organism…” Key Variables: Length and Timing of Exposure, Effective Concentration 25 Metabolomics-based Approaches Brit J Nutrition 92: 549-555, 2004 Metabolomic Analysis of the Biochemical Effects of Dietary Isoflavones Pre-Soy Post-Soy Solanky et al., Analytical Biochemistry 323: 197-204, 2003 Metabolomic Response Depends on the Quantity of Dietary Components Toxicity Response Typical Intakes?? Cell Cycle Inhibition Apoptosis Immune Enhancement Antioxidant Carcinogen Metabolism Nutritional Supranutritional Toxic Exposure 26 Metabolomic Response Will Depend on the Timing of Exposure to Dietary eta y Components Co po e ts Genistein & Mammary Cancer: Timing is Everything Exposure Period Tumors/Rat None 8.9 Prenatal 8.8 Adult 8.2 Prepubertal 4.3 Prepubertal + Adult 2.8 LaMartiniere et al JNutr 132: 552S, 2002 Components are “complex mixtures” - act synergistically 27 Soy Phytochemicals and Green Tea Inhibit Human Mammary Tumors in Mice Zhou et al, Int. J. Cancer 108: 8-14, 2004 Polymeals May Offer Special Attributes Dietary Component % Reduction Wine (150 ml/day) 32% Fish (114 g 4x/week) 14% Dark Chocolate (100 g/day) 21% Fruits and Vegetables 21% (400 g/day) Garlic (2.7 g/day) 25% Almonds (68 g/day) 12% 76% decreased risk of CVD Franco et al. BMJ 329:1447-1450, 2004 Functional Foods: Must Consider Quantity Consumed Form Consumed Duration of Exposure Desired Effect 28 Summary: Phytochemicals and Functional Foods Foods consist of thousands of different chemicals • Each has the potential of being beneficial, neutral, or harmful to the body y and harmful in others • Some mayy be beneficial in some ways • Some chemicals may exert different effects on different people or when taken at differing doses or at different life stages In most cases, the health benefits observed with intakes of certain foods cannot be ascribed to individual phytochemicals Genetic polymorphisms may determine who would benefit “Omic” Knowledge and Enabling Technologies Coupled with Greater Knowledge about the Environment and Behaviors Will Impact our Phenotypes. GENES Information PROTEINS Structure/Activity METABOLITES Composition ORGANISM Phenotype Genomics Proteomics Metabolomics Bio/Physiol/Kinetic Systems Integration of Nutrition and Genomics Clinical Data Genes Proteins Metabolites Clinical & Family History Functional Imaging Laboratory Tests B I O I N F O R M A T I C S H E A L T H & P R E V E N T I O N VLW Go 29 While Diet Linked: Much Confusion Exists About What to Eat Internet Resources • UC Davis Nutrigenomics Distance Learning and Listserv (http://nutrigenomics.ucdavis.edu/) • IOM: Nutrigenomics and Beyond (http://www.iom.edu/CMS/3788/31286/43170.aspx) • National Human Genome Research Institute (http://www.genome.gov/10000464) • National Library of Medicine’s Guide to Understanding Genetic Conditions (http://ghr.nlm.nih.gov/) (http://ghr nlm nih gov/) • NCI’s Understanding Cancer Series: Gene Testing (http://www.cancer.gov/cancertopics/UnderstandingCancer/genete sting) • NCI Series, Public Health Genomics: Closing the Gap Between Human Genome Discoveries and Population Health (http://dceg.cancer.gov/news/meetings-eventsupcoming/genomicscourse) • CDC Office of Public Health Genomics (http://www.cdc.gov/genomics/training.htm) 30 “Although humans make sounds with their mouths and occasionally look at each other, there is no solid evidence that they actually communicate among themselves” 31