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Mol Neurobiol DOI 10.1007/s12035-015-9379-8 Mahogunin Ring Finger-1 (MGRN1), a Multifaceted Ubiquitin Ligase: Recent Unraveling of Neurobiological Mechanisms Arun Upadhyay 1 & Ayeman Amanullah 1 & Deepak Chhangani 1 & Ribhav Mishra 1 & Amit Prasad 2 & Amit Mishra 1 Received: 6 March 2015 / Accepted: 27 July 2015 # Springer Science+Business Media New York 2015 Abstract In healthy cell, inappropriate accumulation of poor or damaged proteins is prevented by cellular quality control system. Autophagy and ubiquitin proteasome system (UPS) provides regular cytoprotection against proteotoxicity induced by abnormal or disruptive proteins. E3 ubiquitin ligases are crucial components in this defense mechanism. Mahogunin Ring Finger-1 (MGRN1), an E3 ubiquitin ligase of the Really Interesting New Gene (RING) finger family, plays a pivotal role in many biological and cellular mechanisms. Previous findings indicate that lack of functions of MGRN1 can cause spongiform neurodegeneration, congenital heart defects, abnormal left-right patterning, and mitochondrial dysfunctions in mice brains. However, the detailed molecular pathomechanism of MGRN1 in cellular functions and diseases is not well known. This article comprehensively represents the molecular nature, characterization, and functions of MGRN1; we also summarize possible beneficiary aspects of this novel E3 ubiquitin ligase. Here, we review recent literature on the role of MGRN1 in the neuro-pathobiological mechanisms, with precise focus on the processes of neurodegeneration, and thereby propose new lines of potential targets for therapeutic intervention. Keywords MGRN1 . Ubiquitin ligase . Cellular quality control mechanism . Neurodegenerative diseases . Aging * Amit Mishra amit@iitj.ac.in 1 Cellular and Molecular Neurobiology Unit, Indian Institute of Technology Jodhpur, Jodhpur, Rajasthan 342011, India 2 School of Basic Sciences, Indian Institute of Technology Mandi, Mandi, Himachal Pradesh 175005, India Introduction Human cell normally contain billions of proteins, and normal integral function of a protein is dependent on its shape, size, and proper localization in appropriate cellular compartments [1]. Proteins continuously perform all major work of cells, in order to maintain cellular homeostasis. Millions of ribosomes synthesize nascent polypeptide chains with an approximate rate of six amino acids per second in cells [2, 3] (Fig. 1a). Disruption in the confirmations of three-dimensional structure of a polypeptide chains tends to misfold them, which may result in abnormal toxic aggregation due to the failure of correct assembly or loss of protein control mechanism in cells [4]. Integrity of a newly synthesized protein is continually at risk of abnormal folding and aggregation due to transcriptional and/or translational failures or exposure of distinct stress conditions at both intracellular and extracellular levels Fig. 1b. To survive under such non-tolerable stress conditions, cells evolved a very efficient interconnected central surveillance protein quality control mechanism that can either refold, degrade, and/or separate misfolded proteins with the help of chaperones and two proteolytic systems [5]. Chaperones target hydrophobic stretches of unfolded proteins and also recognize misfolded proteins for their further folding or degradation. Regular actions of chaperones are to promote folding of newly synthesized proteins and to facilitate their translocation across membranes to reduce the unwanted load of aggregation [6]. Autophagy pathway is involved in the degradation of major random cytoplasmic bulk of cell; recent studies have elaborated the selective mechanism of autophagy pathway with the help of chaperones and E3 ubiquitin ligases in the clearance of non-native or poorly folded proteins [7] Fig. 1c–e. Chaperone-assisted selective autophagy (CASA) is an important mechanism, which helps in the muscle maintenance via degradation of damaged filamin [8]. Loss of CASA Mol Neurobiol Fig. 1 Illustrative representation of cellular protein quality control mechanism. a In cells ribosomes translate mRNA into newly synthesized chain of amino acids and molecular chaperones try to fold them into a perfectly folded protein. b Exposure of different internal and external cellular stress conditions contributes to influence misfolding and aggregation in the crowded cellular milieu. c–e During stress conditions, healthy cells limit accumulation of non-native proteins aggregation with the help of cellular protein quality control mechanism (molecular chaperones, various type of selective autophagy processes, ubiquitin proteasome system, and lysosome system) and alleviate proteotoxic insults in cells functions leads to muscles weakness and declination of cytoskeleton architecture [9]. In living cells, isolation of misfolded proteins, removal of unwanted aggregated proteins, and repair of partially folded or non-native proteins improve interconnected networks of cellular cytoprotective mechanisms. In the process of elimination of damaged proteins, chaperonemediated autophagy (CMA) is another very crucial and selective approach that takes help of lysosomes in the removal of specific proteins [10]. To counter the challenges of protein aggregation and solve the problem of misfolded proteins clearance, cells evolved another alternative mechanism, i.e., chaperone-assisted proteasomal degradation (CAP) which may increase cytoprotective potential of cells against toxic proteins [11]. Here, we are representing a comprehensive overview of this review article (see box). Our current review summarizes the main framework for protein quality control mechanism (QC) and then discusses various steps and components of QC process. In next upcoming section, we narrow down our focus on the linkage of less explored crucial E3 ubiquitin ligase MGRN1 with ubiquitin system. We deliver welllinked information on molecular nature, gene structure, isoforms, mutations, and interacting proteins or crucial substrates of MGRN1 E3 ubiquitin ligase with its roles in Mol Neurobiol pathobiological mechanisms. The next half of article comprehensively represents molecular functions of MGRN1 in neurodegeneration and then discusses the cellular defense role of MGRN1 against protein misfolding and aggregation. After QC functions of MGRN1, we provided additional information on diverse cellular and physiological functions of MGRN1 in the context of diseases and developmental abnormalities. In last future prospective and key questions section of this review elaborates hidden and versatile potential of MGRN1, which may generate new interesting questions and also propose important implications of MGRN1 in the therapeutic intervention of neurodegeneration and aging. Box 1 MGRN1: one protein, multiple functions; implications in diseases ▪ MGRN1, an E3 ubiquitin ligase, found to be involved in protein quality control mechanism, providing cytoprotection against proteotoxic insults ▪ Overview of MGRN1 gene, protein, its isoforms, and evolutionarily conserved domains ▪ Interactions of MGRN1 with numerous proteins and its aberrant functions/mutations linked with various diseases ▪ MGRN1 alleviates proteotoxicity generated by different cellular stress conditions ▪ E3 ubiquitin ligase MGRN1 facilitates the elimination of misfolded/ non-native proteins from cells ▪ Cellular and physiological functions of MGRN1: pigment synthesis, endosomal lysosomal trafficking, mitochondrial functioning, and embryonic development ▪ Exploring future perspectives and therapeutic interventions of MGRN1 in cytoprotection, neurodegeneration and aging Molecular Nature and Journey of MGRN1: a Link to the Ubiquitin System Mouse mahoganoid mutation related to darkening of coat color is associated with mahogunin gene lying on chromosome 16; mutations in this gene change the phenotypic effects of agouti protein [12, 13]. Human MGRN1 full-length homologue identified is KIAA0544, and the precise cytogenetic location is 16p13.3 [14]. Mahogunin encodes a C3HC4 Really Interesting New Gene (RING) domain protein and supposed that it could retain E3 ubiquitin ligase activity on the basis of sequence similarity [15]. In another study, it was clearly shown that recombinant mahogunin exhibits E3 ubiquitin ligase activity with UBC5 (Ubiquitin-conjugating enzyme E2 5). This study also suggests that lack of function of mahogunin can lead to substrate accumulation [16]. MGRN1 Cys residues deleted forms (Δ278–281 and Δ292–293) do not retain auto-ubiquitination activity and UBC3 (ubiquitinconjugating enzyme E2 3), E2 protein also not demonstrates auto-ubiquitination with MGRN1 E3 ubiquitin ligase [16, 17]. MGRN1 Gene Structure and Isoforms In mice, MGRN1 is encoded by mahogunin gene lying on chromosome 16. Alternative splicing of exons (12 and 17) generates four MGRN1 isoforms. MGRN1 null mutant develops dark black color, but all four isoforms do not display significant role in pigment-type switching. Isoforms I, II, and III were well expressed in the brain, kidney, and heart, and almost equal expression of all isoforms were observed in liver tissue [18]. Expression profile of MGRN1 in brain tissue is also high in both mouse and human and retains more than 90 % sequence similarity in its homologues, perhaps RING domain region is also conserved in invertebrates and vertebrates genomes [16]. Human MGRN1 gene contains 17 exons, and alternative usage of exons (12, 16, and 17) produces different isoforms as shown in Fig. 2a, b. Melanoma cells were shown to express four MGRN1 isoforms [19]. It has also been shown in various cellular localization studies that MGRN1 expresses in different cellular compartments such as cytoplasm, plasma membrane, early endosome, and nucleus [19, 20]. Recently, it has been shown that RNF157 is a homologue of the mahogunin ring finger-1 E3 ligase involved in the maintenance as well as regulation of dendritic growth in cultured neurons and is also crucial for neuronal survival [21]. MGRN1 acts as an E3 ubiquitin ligase. Domain associated with RING 2 (DAR2) is another evolutionary conserved domain, localized adjacent to RING finger domain. In Arabidopsis, RING E3 ubiquitin ligase AtAIRP3/LOG2 (LOSS OF GDU 2) associates and ubiquitylates RD21 (Responsive to Dehydration 21) [22]. Arabidopsis thaliana LOG2 and MGRN1 are functionally conserved, and mammalian MGRN1 interacts with plant membrane protein GLUTAMINE DUMPER1 (GDU1) and further induces its ubiquitylation [23]. As shown in Fig. 2c, d, various species retain MGRN1 protein containing DAR2 and RING finger domain that exhibits a similar or conserved region. We know that MGRN1 in various species do not represent an exact level of similarity in RING finger and DAR2 domain region, still previous studies and current observation provides a clue that they may have a potential to restore their cellular functions. Recently, it has been shown that MGRN1 comprises a PSAP motif, which is also conserved in different species. Interestingly, PSAP motif of mouse MGRN1 binds with ubiquitin E2 variant (UEV) domain of tumor susceptibility gene 101 (TSG101), a component of the endosomal sorting complex required for transport I (ESCRT-I); site directed mutagenesis mutant of MGRN1, i.e., MGRN1 (ASAA) did not bind with TSG101. PSAP motif is absent in both the vertebrate family member MGRN2 (RNF157) and invertebrate MGRN homologues [24]. Earlier, it has been demonstrated that RING finger domain is dedicated to numerous cellular functions, e.g., signal transduction, transcription, and protein ubiquitination [25–27]. Recently, it has also been observed that MGRN1 regulated Mol Neurobiol Fig. 2 Schematic diagram representing MGRN1: location, gene structure, isoforms, organization, and sequence alignment. a, b Location of MGRN1 gene on human chromosome 16 and genomic structure of MGRN1 showing exons 1–17 (a); the linear structure of different isoforms of MGRN1 generated by alternative splicing of 12 and 17 exons; details are explained in section (MGRN1 Gene Structure and Isoforms) (b) [19, 24, 37]. c MGRN1 proteins from various species showing the conservation of DAR2-RING region and PSAP motif [23, 107]. d Sequence alignment of MGRN1 proteins showing conservation of DAR2 and Ring finger domain (Zebrafish (NP_956173.1), Pigeon (XP_005508472.1), Xenopus (NP_001083558.1), Mouse (NP_ 001239366.1), Human (NP_001135761.2), and Arabidopsis (Q9S752.1)). Sequences were aligned using Clustal Omega and visualized using Jalview [108, 109]. Default coloring scheme for Clustal Omega in the Jalview program was used. Absolute conservation of amino acids is depicted by asterisk (*). Score 0–9 followed by plus sign represents amino acid conservation levels Mc1r functional coupling to the cAMP cascade is independent of ubiquitylation [19]. To gain insight into the RING finger domain organization of MGRN1 and to better understand the elementary steps for the regulation of MGRN1 ligase activity, it is needful to obtain the crystal structure of MGRN1, which is still not known. Since various sequence analysis reveal that MGRN1 contains a RING finger domain [16, 17, 23], therefore, most likely in near future additional critical substrates Mol Neurobiol and hidden cellular functions of MGRN1 may be identified. Compelling evidences indicate roles and functional implications of MGRN1 in neurodegenerative diseases. In the next section, we elucidate and provide insight of MGRN1 into disease-related proteins, which may also open new perspectives of critical substrates identification. Molecular Functions of MGRN1 in Neurodegenerative Diseases Recently published draft map of human proteome explores the identification of proteins encoded by more than 17,000 genes (near about 84 % of human protein coding genes) [28]. In densely packed cellular environment, high protein concentration intensely fold up the fatal chances of their unwanted interactions with other native and non-native proteins which may further lead to high probability of misfolding and aggregation of existing and newly synthesized polypeptide chains [29, 30]. In previous few years, numerous studies have established a fact that neuronal cells are more susceptible and vulnerable towards misfolded proteins associated toxicity [31, 32]. Chaperones and E3 ubiquitin ligases are the key players in cellular quality control system for the clearance of abnormal proteins while their lack of function may cause various neurodegenerative diseases [20, 33, 34]. MGRN1 is a putative RING finger domain containing E3 ubiquitin ligase and is widely expressed in different tissues including brain [18]. Presence of vacuoles throughout the central nervous system and further degenerative changes are the pivotal characteristics of neurodegeneration [35, 36]. ESCRT-I component TSG 101 Ubiquitin E2 variant (UEV) domain binds with MGRN1 through its PSAP motif. Interaction of MGRN1 with TSG101 promotes its multimonoubiquitylation in a proteasome independent manner. MGRN1 null mouse suggests that neuronal cells are specifically under higher risk as compared to other cell types because of the disruptive endosomal–lysosomal system. Table 1 diseases Knockdown of MGRN1 deregulates endosome-to-lysosome trafficking of epidermal growth factor receptor [37]. Most likely, under lack of MGRN1 functions, other E3 ubiquitin ligase may take over the ubiquitination of TSG101 and inhibit the formation of insoluble aggregates. TAL (also known as LRSAM1) and MDM2 are two different E3 ubiquitin ligases, which are involved in the ubiquitinylation of TSG101 protein [38–40]. MGRN1 null mutants exhibit problems in pigmenttype switching, induce oxidative stress, and show mitochondrial dysfunction preceding neurodegeneration [41, 42]. Proteinaceous infectious particles prions (PrPSC) are generated from normal cellular isoform PrPC via post-translational process and cause Creutzfeldt-Jakob and GerstmannStraussler-Scheinker diseases [43–45]. Previously, it has been shown that MGRN1 interacts with both transmembrane isoform linked with prion disease (CtmPrP) and toxic cytosolic form (cyPrP). Depletion of MGRN1 leads to altered lysosomal morphology and contributes in neurodegeneration due to its improper sequestration [46]. It is known that pathogenic forms of prion protein originate from the conversion of its own normal form. But, it still remains central to research on prions to know how these infective proteins lead to neuronal dysfunction and death. An interesting observation detects that MGRN1 lack of function or overexpression both do not induce prion proteins like pathological symptoms on intracerebral inoculation of Rocky Mountain Laboratory (RML) prion protein. Increase or decrease in MGRN1 levels do not influence the progression of transmissible spongiform encephalopathy in mice inoculated with proteinaceous infectious prions particles (PrPSC) [47]. Nevertheless, mounting evidences suggest cellular quality control components target prions for their clearance, and failure of such efforts generates severely toxic insults and mitochondrial dysfunction. Furthermore, this affects cellular processes such as post-Golgi vesicular trafficking of membrane proteins [48–52]. One potential interpretation of these studies is that loss of MGRN1 function plays a significant role in neurodegenerative diseases, somewhere linked with Enlisted representation of MGRN1 interacting proteins and molecular functions and aberrant function of MGRN1 linked with various Interacting proteins of MGRN1 References Molecular functions of MGRN1 References MGRN1 mutations detrimental effects References TSG101 [37] Energy and insulin homeostasis [15] cyPrP/(Ctm)PrP [46] Embryonic patterning [95] MC1R/MC2R Molecular chaperone [19, 110] [61] Mitochondrial function Endosomal trafficking NEDD4 [111] Melanocortin signaling [113] Cellular protein quality control [61, 112] Microtubule stability and mitotic [113] spindle orientation Spermatogenesis [114] α-tubulin Expanded Polyglutamine Proteins [112] Abnormal left-right axis patterning [95] [41] [37] Congenital heart defects [95] [19, 110] Spongiform neurodegeneration [16] Male infertility [114] Mol Neurobiol mitochondrial dysfunction, vacuoles formation and oxidative stress via interaction with the components of cellular quality control mechanism as summarized in Table 1. Perhaps these speculations need further detailed study in near future. MGRN1 Interaction with Cellular Protein Quality Control Components Against Misfolded Aggregates: Internal Competition or Defined Cooperation in QC Pathway? Each cell retains an ability to cope up against proteotoxic insults and to sustain the proteostasis after broad cellular dysfunctions [53, 54]. However, much information is still unknown such as why various components of cellular quality control pathways deposit [55, 56] or get sequestered [57, 58] with abnormal protein aggregates? Whether such unwanted interactions are healthier cooperative attempts to solve the problem or these are misregulated detrimental competitive trials to target misfolded proteins? Eukaryotic cells perform cotranslational folding with the help of few molecular chaperones (Hsp40 and Hsp70). Cellular stress conditions induce a major shift in intracellular distribution of chaperones such as Hsp70; overexpression of Hsp70 provides cytoprotection against various cellular insults and inhibits apoptosis [59, 60]. We observed in our previous study [61] that under distinct cellular stress conditions, MGRN1 follows the similar profile of Hsp70; both proteins colocalize and pivotally are recruited with heat-denatured misfolded luciferase protein inclusions as depicted in Fig. 3a, b. Our earlier finding suggests the possible molecular pathomechanism implication of MGRN1 in neurodegenerative diseases; we extended our findings and observed that under stress conditions, MGRN1 interacts with various cellular QC components. Earlier, it has been observed that p62/SQSTM1 polyubiquitin-binding protein and light chain 3 (LC3) colocalizes with mutant huntingtin aggregates [62–64]. p62 generates a stress response triggered by oxidative stress [65, 66]. Our previous study also provides a clear insight that MGRN1 E3 ubiquitin ligase could also be recruited to p62 positive polyubiquitinated perinuclear protein aggregates during the autophagy dysfunction as shown illustratively in Fig. 3c [20]. Proteasome inhibition leads to a strong colocalization of p62 with Hsp70 chaperone in perinuclear aggregates [67]. Altogether, these observations raise a convincing possibility that MGRN1, p62, Hsp70, and probably a few components of ubiquitin proteasome system (UPS) and autophagy somewhere crosstalk or interact to each other for the sorting and effective clearance of misfolded proteins in dense cellular pool. More recent work indicates that, probably, MGRN1 acts as a crucial player in cellular QC pathway. The emerging functions of MGRN1 prompted us to further validate its QC capability against other misfolded proteins in a more defined pattern. Expansions of polyglutamine proteins generates insoluble ubiquitin positive aggregates and serve as chief factor in nine known expanded trinucleotide (CAG) repeat expansion disorders [68]. Ataxin-3 causes spinocerebellar ataxia type-3, a neurodegenerative disease; it sequesters p62/ SQSTM1 in to expanded polyglutamine ataxin-3 aggregates [69]. Similarly, expanded polyglutamine proteins sequester various transcription factors including TATA box binding protein (TBP) and CREB binding protein (CBP) [70–72]. However, the precise molecular mechanism of neuronal loss in Huntington disease (HD) is not known. Few studies elaborate that Htt aggregates repress p53-mediated transcription and sequestration of NF-Y transcriptional factor and decrease Hsp70 expression level [73–75]. To further explore the cellular QC function of MGRN1 in cells, we performed colocalization studies with expanded polyglutamine proteins. Surprisingly, we observed recruitment of MGRN1 with ubiquitin and p62 positive inclusions of polyglutamine-expanded proteins both in in vitro and in vivo models as represented diagrammatically in Fig. 3d. Overexpression of MGRN1 provides cytoprotection against toxicity linked with expanded polyglutamine proteins [34]. Previously, it has been studied that few E3 ubiquitin ligases (E6-AP, CHIP, Gp78, and Hrd1) promote the degradation of polyglutamine aggregation and suppress the toxicity mediated by expanded polyglutamine proteins [76–79]. Above described studies support our recent finding that MGRN1 is a putative E3 ubiquitin ligase that can target pathogenic expanded polyglutamine proteins for their elimination and able to protect cells against poly (Q)-induced toxic events. Distinct Molecular Functions of MGRN1: Multiple Cellular Possibilities and Challenges Previous detailed studies of MGRN1 gene and its encoded product in E3 ubiquitin ligase have led to tremendous implications in neurodegenerative diseases and open new overlap between the known interacting partners and genes. In the current review, we summarize and illustratively depict the major cellular functions of MGRN1 as represented in Fig. 4: (a) role in pigment switching, (b) MGRN1 involvement in endosomal lysosomal trafficking, (c) MGRN1 depletion induced mitochondrial dysfunction, (d) irregular left-right axis patterning in MGRN1 mutant mice. Substantial evidences from various studies indicate that more imperative MGRN1 functions remain to be discovered. MGRN1 mutant mice brains develop completely black coat color linked with agouti signaling protein (ASIP); four different MGRN1 isoforms usually do not represent significant functional difference in pigment-type switching [15, 16, 18]. Aberrant function of Mc1r and Agouti influence pigmentation in mice [18, 80]. Interaction of MGRN1 with Mc1r Mol Neurobiol Fig. 3 Recruitment of MGRN1 with misfolded protein aggregates and molecular function in cellular quality control mechanism. a, b Numerous diseases have been identified linked with abnormal aggregation of misfolded proteins with chaperones and components of cellular QC pathway. MGRN1 is recruited towards abnormal aggregates and colocalizes with Hsp70 chaperone under unusual subsets of stress inducing conditions (a); MGRN1 associates with heat stress conditions induced luciferase protein inclusions in cells (b) [20]. c, d Accumulation and aggregation of MGRN1 colocalizes with ubiquitin, p62, and Hsp70 inclusions in cells (c); furthermore, MGRN1 also recruits with ubiquitin and p62 positive expanded polyglutamine proteins inclusions (Huntingtin and Ataxin-3) in cells; similarly disruptive profile of MGRN1 was observed in R6/2 transgenic mice model of Huntington disease (d) [34]. This unique feature of MGRN1 provides significant recognition of being categorized as quality control E3 ubiquitin ligase most likely involved in protein conformational disorders generates pheomelanin via agouti signaling protein pathway. But in the absence of MGRN1, Mc1r activation takes place via alpha melanocyte stimulating hormone (α-MSH). Exchange of GDP-GTP induces cAMP production that leads to eumelanin (black/brown pigment) synthesis through adenylyl cyclase [81–83]. Lysosomes are membrane bound acidic vacuoles, majorly responsible for the recycling of damaged or poor organelles, macromolecules, and proteins by endocytosis and autophagy. Defects in lysosomal functions due to genetic mutations lead to lysosomal storage disorders (LSDs) and also cause aging and neurodegenerative diseases [84–86]. siRNA-mediated Mol Neurobiol Fig. 4 A schematic diagram to represent MGRN1 loss of function causing multifactorial disturbances or problems in various critical cellular activities. a MGRN1 associates with Mc1r and produces pheomelanin through agouti signaling pathway and lack of MGRN1 function or null mutants in mice generates dark coat color [15, 17, 18]. b MGRN1 null mutants demonstrate disturbed endolysosomal trafficking and early enlarged endosomes. RING finger E3 ubiquitin ligase activity of MGRN1 targets TSG101 for multiple mono-ubiquitination in proteasomal independent manner [16, 24, 37]. c Depletion of MGRN1 induces mitochondrial dysfunction in cells and mice; this may act as a causative factor in neurodegenerative diseases [41]. d Mutations in MGRN1 produce complex congenital heart defects (CHD) and abnormal LR patterning in mice embryos [95]. Overall, these studies suggest that MGRN1 occupies a wide range of diverse cellular functions and, therefore, needs an in-depth observation linked with diseases down regulation of endogenous MGRN1 modulates the endolysosomal structures; cells appear with enlarged early endosomes and disarrays endolysosomal trafficking of epidermal growth factor receptor (EGFR) [37]. MGRN1 null mutant mice brains have altered profile of multimonoubiquitinated TSG101 and may have insoluble TSG101 aggregates. Probably, in MGRN1 null mice, aberrant function of normal TSG101 contribute in the molecular pathomechanism of neurodegeneration associated with endolysosomal trafficking [24]. In our previous study, we also observed that after autophagy inhibition, p62, ubiquitin, and Hsp70 chaperone colocalize with MGRN1 near to the nuclear periphery region. Interestingly, it has earlier been shown that lysosomal Hsp70 stabilizes lysosomal membrane via binding with endolysosomal anionic phospholipid bis (monoacylglycero) phosphate (BMP) [87]. Ribosomes are also active in mitochondria and synthesize a number of proteins. Oxidative stress results in the aggregation of misfolded or damaged proteins in crowded cellular milieu and overall potentially affects the numerous cellular functions [88, 89]. Proteomic analysis of MGRN1 null mutant mice brain reveal that mitochondrial proteins were significantly reduced with elevated oxidative stress. Complex IV (cytochrome c oxidase) level was dramatically reduced in MGRN1 null mutant mice [41]. We also observed that siRNA-mediated depletion of MGRN1 in cells make them Mol Neurobiol more susceptible for mild oxidative stress and overexpression of MGRN1 provide cytoprotection against oxidative stress induced cell death [20]. Our existing knowledge about the mechanism of left-right (LR) body axis determination during development period is still limited. The accumulated evidences established a strong role of few genes such as Nodal, EGF–CFC family of extracellular factors, Lefty1, Lefty2, and transforming-β-related signaling molecules in LR axis determination [90–94]. Recently, interesting finding has also come to insight concerning the important role of MGRN1 in left-right (LR) signaling cascade and embryonic patterning determination. This study elaborates that MGRN1 mutant embryos exhibit complex congenital heart defects (CHD) and abnormal LR patterning [95]. However, more refined new crucial substrates finding studies targeting the ubiquitin ligase activity of MGRN1 implicated in normal left-right (LR) axis embryo developments are imperatively needful. It is also important to recognize the proteins that significantly crosstalk to MGRN1 and also to know how their aberrant forms directly or indirectly generate moderate risk of diseases by affecting MGRN1 diverse cellular functions. Future Prospective and Key Questions Different neurodegenerative diseases share common cellular and molecular problem of misfolded proteins aggregation and inclusion bodies formation. In previous studies, it has been shown that ubiquitin, proteasome, autophagy pathway components, molecular chaperones, nascent polypeptide chains, and transcription factors are chiefly present with aggregates or inclusion bodies [29]. Few interesting reports indicate that overwhelmed aggregation of abnormal proteins compromises the proteolytic functions of both ubiquitin proteasome system and autophagy pathway [96, 97]. Perturbations in the function of proteolytic machinery generate a major challenge to resolve or find a possible cure against the problem of protein aggregation in neurodegenerative diseases. The blood–brain barrier (BBB) is a highly selective permeability barrier, which restricts the passage of numerous drugs and major molecules and essentially, this is another fundamental challenge to deliver drugs across the blood–brain barrier [98, 99]. Still, the pivotal reason why neuronal cells are not capable to eliminate visible abnormal protein aggregates and how their formation contributes in proteotoxicity generation and neuropathogenesis is not well known. Now, another important aspect is needed to be addressed to the neuroprotective agents or molecular tactics that could be used for the suppression of neurotoxic load caused by protein misfolding aggregation? Normally, proteins are routinely cleared by ubiquitin proteasome system and autophagy pathway. Chaperones promote the folding of non-native proteins and increase their further chances of survival in dense crowded milieu. It is very important to search inducers of molecular chaperones, which can prevent or suppress misfolding of proteins and this strategy may be useful as therapeutic intervention in neurodegeneration and aging [100–102]. Cooperative functions of autophagy and ubiquitin proteasome system can serve as an integral part of clearance mechanism and may heal the detrimental cellular loss induced by proteotoxic insults [103–105]. One of the key tactics is to find out novel chemical inducers which can specifically promote protein degradation, and this strategy can be also useful to keep low basal levels of over accumulated abnormal proteins [106]. Understanding the detailed physiological functions of protein quality control mechanism and its hidden possible mechanisms in the causation can help in the prevention of neurotoxic load caused by protein misfolding aggregation. An increasing body of evidence opens few first order questions about the cellular and molecular nature of MGRN1 and about its function as an E3 ubiquitin ligase. But how does the aberrant function of MGRN1 interplay significant role in neurodegeneration still remain obscures? How does the E3 ubiquitin ligase activity of MGRN1 influence the endogenous levels of crucial substrates, mitochondrial dysfunction, and misfolded protein aggregate formation needs further detailed analyses and careful interpretation? In principle, detailed molecular characterization of MGRN1 can exert new significant findings to influence the cellular PQC pathway and most likely opens new hidden potential of this novel gene in aging and neurodegeneration. However, it remains less clear how the MGRN1 is activated for the misfolded protein recruitment cascade along with other components of UPS and autophagy pathway? The lessons learned from previous findings already reveal that MGRN1 could serve as a wide range of essential cellular functions. But what are the key coplayers of MGRN1; which other E3 ubiquitin ligases can execute similar functions in the macromolecular crowding need detailed study and implementation. Over the past few years, incredible progress has been made in interpreting the role of E3 ubiquitin ligases in neurodegenerative diseases. Now, it is important to design new drugs, based on the defective processing caused by the aberrant functions of these E3 ubiquitin ligases. MGRN1 loss of function could disturb the endolysosomal trafficking; however, the detailed molecular pathomechanism is unknown. In near future, identification of MGRN1 crystal structure may reveal more about the role of its E3 ubiquitin ligase activity, substrate binding capacity, and improve our understanding about how MGRN1 mutations generate a wide variety of functional Mol Neurobiol tribulations in cells. The mechanistic basis of these analyses of MGRN1 most likely opens the hidden high versatile potential of this novel protein to further improve our understanding to protect cells from proteotoxic old or damaged proteins. 11. 12. 13. Acknowledgments This work was supported by the Department of Biotechnology, Government of India. AM was supported by Ramalinganswami Fellowship (BT/RLF/Reentry/11/2010) and Innovative Young Biotechnologist Award (IYBA) scheme (BT/06/IYBA/ 2012) from the Department of Biotechnology, Government of India. AU was supported by a research fellowship from the Council of Scientific and Industrial Research-University Grants Commission (CSIR-UGC), Government of India. The authors would like to thank Mr. Bharat Pareek for his technical assistance and the entire lab management during the manuscript preparation. We apologize to various authors whose work could not be included due to space limitations. 14. 15. 16. Compliance with Ethical Requirements Conflict of Interest The authors declare that they have no competing interests. 17. 18. References 19. 1. 2. 3. 4. 5. 6. 7. 8. 9. 10. Dobson CM (2003) Protein folding and misfolding. Nature 426(6968):884–890. doi:10.1038/nature02261 Duncan R, Hershey JW (1983) Identification and quantitation of levels of protein synthesis initiation factors in crude HeLa cell lysates by two-dimensional polyacrylamide gel electrophoresis. 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