WHY CHOOSE? GENALICE MAP Product Specification Sheet

WHY CHOOSE?
GENALICE MAP
Product Specification Sheet
No compromises. No choices. This was the
challenging starting point when we designed the
new algorithms and configurations for our ultra-fast
Next-Generation Sequencing (NGS) read alignment
and variant calling solution; GENALICE MAP.
MAP transforms DNA-Seq and RNA-Seq research
projects, in terms of both speed and quality. Our
groundbreaking NGS data processing solution is
particularly suitable for processing large scale, e.g.
Whole Genome Sequencing (WGS), projects.
MAP runs on commodity Intel Xeon E5 processors and is delivered in a turn-key appliance, the
GENALICE VAULT, which also contains real-time
monitoring, workflow management software and an
embedded database.
The alignment speed is simply unbeaten and ranges
from an average of 32 minutes for one human
genome equivalent with an average coverage of 37x
(1 HGE37) on the XS model to only 2 minutes for
1 HGE37 on the XL model. Each MAP module with
a standard dual Intel Xeon E5-2600 series CPU can
align 40-130 Megabases/second, which is up to 100x
faster than conventional alignment tools.
Users have the opportunity to work with the
proprietary small file format GAR (GENALICE Aligned
Reads) or to convert these near- time to the widely
used BAM files. GAR files are also compatible with
most downstream analysis tools.
GENALICE MAP
GENALICE MAP
Product Components
•
Hardware
•
Operating System
•
Software
•
Database
•
Storage
GENALICE VAULT XS
OS/Database/Software
•
SUSE Linux Enterprise server 11 Service Pack 2 on standard server board
•
MAP Module (for alignment & variant calling jobs)
•
CONTROL Module (for Real-time Job Monitoring (INSPECT) & Workflow Management (ADMIN))
•
Oracle embedded Database
•
Graphical User Interface
Hardware specifications (XS)
MAP module specifications:
CONTROL module specifications:
•
2x Intel Xeon E5-2600 series
•
2x Intel Xeon E5-2600 series
•
128GB RAM memory
•
32GB RAM memory
•
2x 256GB SSD
•
4TB HDD
•
1Gb/s Ethernet
•
1Gb/s Ethernet
•
20Gbit/s InfiniBand
•
20Gbit/s InfiniBand
Product configurations
To tailor our NGS data processing solution to your specific needs, we have five configurations# available; ranging in number of MAP
servers, storage space and included number of named users:
Specs
Storage HGE37*
# MAP modules
XS
S
M
L
XL
500
1
1000
4
2.500
6
5000
8
10.000
16
688
align HGE37/day
average
48
96
172
344
minutes to align HGE37
average
32
16
8
4
2
Average total realignment days for fully loaded appliance
10
10
10
15
15
Performance
15
The exact product specifications may be slightly different from described
on this sheet
*HGE37 = Human Genome Equivalents with an average coverage of 37x
#
More information & pricing:
Please contact our sales team via +31 88 1221 000 or sales@genalice.com
GENALICE B.V. | Deventerweg 9d | 3843 GA Harderwijk |
+31 88 1221 000 | info@genalice.com | genalice.com | Twitter GenaliceDNA